As I understand mechanics: it should trigger, ship loses the buff and goes to stealth with some bonus protection, and that's what never happened just like with Anakin before the fix
I've encountered the bug from time to time since the release of Negotiator. All through that time I've seen it with a variety of GR ships. It just happens to come up more often with Ani since we try to kill him first.
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https://answers.ea.com/t5/Bug-Reports/Unending-loyalty-bug/td-p/8231328
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